Workshops
As a team we have travelled the world teaching students the wonders of genomics. Pick a place on the globe to see what we ran there.
- 30workshops
- 18locations
- 2010first workshop
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Genomic Epidemiology in Infectious Diseases – Pathogen Genomics - Capacity Building Workshop in Southeast Asia
National University Singapore, Feb. 2-6 2015 with YY Teo
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International Workshop in Epidemiology in Infectious Diseases
Under the Researcher Links scheme offered within the Newton Fund, the British Council and the Thailand Research Fund will be holding a workshop on “Genomic Epidemiology in Infectious Diseases (GEID2016)” in the Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand on March 7 – 11, 2016. The workshop is being coordinated by Prof. Taane Gregory Clark (London School of Hygiene and Tropical Medicine, LSHTM) and Dr. Prapat Suriyaphol (Mahidol University), and will have contributions from other leading researchers including Prof Chris Drakeley (LSHTM), Prof Martin Hibberd (LSHTM), Assoc Prof Teo Yik Ying (National University of Singapore, NUS) and Dr Ong Twee Hee (NUS).
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International Workshop in Epidemiology in Infectious Diseases
To take full advantage of new ‘omic technologies requires the ability to analyse large amounts of data using methods from bioinformatics, population genetics and statistics – the focus of this Workshop. Specifically, the Workshop offers hands-on experience of processing sequencing data to construct genomes, identifying genomic variants and applying downstream methods, such as phylogenetics. Further, the course covers transcriptomic and proteomic analysis in human and pathogen settings. High profile examples, including malaria, TB and MRSA, will be used to illustrate the concepts, and there is a strong emphasis on how to implement the methods in practice, with the majority of sessions computer-based.
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International Workshop in Epidemiology in Infectious Diseases
This five-day Workshop will be held in October, aimed at early career researchers from the UK and Malaysia. This Workshop will bring together global experts on the study of genomic epidemiology of infectious diseases, particularly those affecting Malaysia. The Workshops aims to promote collaborations that will enhance the use of tools in bioinformatics, population genetics and statistics in infectious disease research. Day one and five of the Workshop, will focus on presentations and discussions relating to the role of genomics in the prevention and control of infectious diseases, with a focus on Malaysia. The other days, which will be held at the Computational Science and Research Centre, will focus on genomic analyses. By the end of the Workshop, participants will be able to: (a) process raw sequence into a set of informative variants, through mapping to a reference genome or using de novo or reference-free assembly approaches, (b) conduct transcriptomic and proteomic analysis, in an integrated systems biology approach, and (c) perform downstream population genetic and association analysis.
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Workshop on the Genomic Epidemiology of Infectious Diseases
Brazilian Biometrics Society, Maringa, Brazil, July 2011 with Nuno Sepulveda
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Genomics and the Other Omics
The team organised a workshop regarding the basics of multiple omics including genomics and transcriptomics in Medan Indonesia. The team taught up to 60 individuals involving them with practical examples in the real world and including multiple lectures across 4 days.
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Genomics of Infectious Disease workshop and symposium
The “Genomics of Infectious Disease Meeting” in July 2017, held at Philippines Genome Center, attracted over 150 attendees. Funded by the British Council and Philippine DOST with Eva Maria Cutiongco-de la Paz
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Genomics of Infectious Diseases workshop
Siriraj Hospital / Mahidol University, Feb. 2016. Funded by British Council Newton Researcher Links Workshop grants with Angkana Chaiprasert
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Workshop on genomics in Dhaka
November 2023; International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b). Funded by Royal Society. Co-organised with Dr Dinesh Mondal
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Genomics of Complex diseases
Universiti Sains Malaysia, October 2018. Funded by British Council Newton Researcher Links Workshop grants with Zafarina Zainuddin
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One health 'Omics workshop
To take full advantage of new ‘omic technologies requires the ability to analyse large amounts of data using methods from bioinformatics, population genetics and statistics – the focus of this course. Specifically, this course offers hands-on experience of processing sequencing data to construct genomes, identifying genomic variants and applying downstream methods, such as phylogenetics. Further, the course covers transcriptomic and proteomic analysis in human and pathogen settings. High profile examples, including malaria, TB and MRSA, will be used to illustrate the concepts, and there is a strong emphasis on how to implement the methods in practice, with the majority of sessions computer-based.
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International Scientific Talks of Partners from LSHTM
Working in partnership is central to achieving our mission to improve health and health equity in the UK and worldwide. By collaborating with global partners we can bring the best people and knowledge together to achieve excellence in research, education, policy and practice. We have longstanding and extensive partnerships, especially in low and middle-income countries, and are continually looking to build on our relationships and activities to both learn from and empower our colleagues and partners throughout the world.
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Bioinformatics Short course
In February and March of 2014, the Pathogen Seq Lab hosted an internal bi-weekly workshop titled “Bioinformatics Short Course”. This intensive course was tailored specifically for the lab’s internal staff members, aiming to enhance their skills and knowledge in the field of bioinformatics. The course provided a comprehensive introduction to bioinformatics, highlighting its role and importance in the modern research landscape. It covered various key topics, including sequence analysis, genomics, proteomics, structural bioinformatics, and more.The course’s bi-weekly structure allowed for a focused and in-depth exploration of each topic. Staff members were given hands-on training on data analysis and interpretation, enabling them to apply bioinformatics concepts and tools to their research effectively.
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Infectious Disease ‘omics
Beginning in 2017 and ongoing, the Pathogen Seq Lab team in London has been providing a pioneering and comprehensive workshop called “Infectious Disease ‘omics”. Held every December, this workshop aims to educate and foster an understanding of the role and potential of ‘omics technologies in the field of infectious diseases. To take full advantage of new ‘omic technologies requires the ability to analyse large amounts of data using methods from bioinformatics, population genetics and statistics – the focus of this course. Specifically, this course offers hands-on experience of processing sequencing data to construct genomes, identifying genomic variants and applying downstream methods, such as phylogenetics. Further, the course covers transcriptomic and proteomic analysis in human and pathogen settings. High profile examples, including malaria, TB and MRSA, will be used to illustrate the concepts, and there is a strong emphasis on how to implement the methods in practice, with the majority of sessions computer-based.
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Pathogen genomics & genetic epidemiology of infectious diseases Short course
The Pathogen Seq Lab team delivered an innovative and dynamic short course at the renowned London School of Hygiene and Tropical Medicine every September from 2010 to 2016. The course, titled “Pathogen Genomics & Genetic Epidemiology of Infectious Diseases”, was a comprehensive exploration into the genetic aspects of infectious diseases and the role of pathogen genomics in public health.
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High throughput sequencing analysis
The Pathogen Seq Lab team, known for their expertise and innovation in sequencing technologies, conducted an enriching short course spanning five years at the esteemed London School of Hygiene and Tropical Medicine. Taking place each September from 2010 to 2015, the course was designed to shed light on the application and interpretation of high-throughput sequencing data in the field of public health. Focusing primarily on epidemiological investigations and outbreak response, this course offered practical knowledge in the rapidly advancing field of pathogen genomics. The attendees learned the essential tools and methodologies required for analyzing sequencing data, including assembly, annotation, and comparative genomics. Besides, the course facilitated an understanding of the challenges associated with high-throughput sequencing and how to overcome them.
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TB Genomics Asia Network
TB Genomics Asia Network (UKRI GCRF funded) inaugural meeting (The Philippines, February 2019)
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Pathogen Genomics workshop in Research Institute for Tropical Medicine, Philippines
Research Institute for Tropical Medicine, November 2017. Funded by the British Council and Philippine DOST with Dodge Lim
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Pathogen MultiOmics and Bioinformatics
June 23- July 3 2021; July 3-7 2023 with Joao Perdigao
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Pathogen genomic & Infectious disease epidemiology
Univ. Sao Paolo, March 2015, 5 days taught by Dr. Jody Phelan
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TB Whole genome sequencing analysis Principles and Applictions
Thailand whole genome sequencing data analysis meeting
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Infectious Disease ‘Omics workshop
Alongside the unfinished agenda of tackling infectious diseases, malnutrition, and child and maternal mortality, South East Asia is on the front line of pandemic influenza, evolving drug-resistance in malaria and other pathogens, public health impacts of earthquakes and floods, and above all, the growing threat of non-communicable diseases such as cancers, cardiovascular disease and diabetes
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Workshop on Genetic Epidemiology
Nov. 2011-2013, 1 week, Gulbenkian Institute, Lisbon with Nuno Sepulveda
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Bioinformatics and genomics data analysis clinic.
Members of our team (Jody, Linfeng, Matt) ran a bioinformatic analysis clinic at the Research Institute for tropical Medicine, Department of Health in the Philippines, with whom we have collaborated since 2016 on infectious disease genomics and had continuous joint (UKRI) funding. The aim of the clinic was to provide training to biomedical researchers and technicians in the use of bioinformatic tools and techniques for the analysis of genomic data, as well as directly assist them with analysis. Over two days, the team assisted with AMR, COVID-19, malaria, TB, and Schistosoma genomic, transcriptomics and serological data analysis.
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MalariaGEN workshops on Genetic epidemiology
20 participants with Kirk Rockett
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MalariaGEN workshops on Genetic epidemiology
20 participants with Kirk Rockett
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MalariaGEN workshops on Genetic epidemiology
20 participants with Kirk Rockett
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MalariaGEN workshops on Genetic epidemiology
20 participants with Kirk Rockett
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One Health ‘omics Workshop
Philippines Genome Center, 150 participants with Eva Maria Cutiongco-de la Paz
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Pathogen Genomics workshop Cape Town
Univ. Cape Town. Funded by British Council Newton Researcher Links Workshop grants with Keertan Dheda
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