PUBLICATIONS
The genomics centre has published in the most prestigious and scientific journals for the entire world. Our goal is to improve the global understanding of infectious diseases and improve healthcare and learning worldwide.
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A Recombinase Polymerase Amplification Lateral Flow Assay (RPA-LF) for detection of Babesia divergens
ECJ Bin, K Hughes, C Whitehorn, M White, K Hansford, J Medlock, ...
Genome-wide analyses of Mycobacterium tuberculosis complex isolates reveal insights into circulating lineages and drug resistance mutations in The Gambia
F Faal, N Top, O Jobe, SM Colley, A Ayorinde, A Mendy, B Sarr-Kuyateh, ...
Scientific reports, 2026
Novel Pfk13 and Pfubp1 genotypes in African Plasmodium falciparum isolates exhibiting reduced susceptibility to the antimalarials artemisinin and lumefantrine
S Pratt, DA van Schalkwyk, L Stewart, EF Hocke, S Mannan, C Berry, ...
mBio, e03676-25, 2026
Whole genome sequencing to inform the epidemiology of Plasmodium falciparum malaria in the elimination setting of Malaysia
MKI Tan, N Billows, PCS Divis, C Daneshvar, J Edgeworth, JC Singh, ...
BMC genomics, 2026
Kinetics of antimalarial antibodies in children with common haemoglobinopathies in a Tanzanian population
A Manjurano, N Sepulveda, S Mkumbaye, TG Clark, A Ndaro, CW Wang, ...
Frontiers in immunology 17, 1685626, 2026
Plasmodium knowlesi can adapt to infect Duffy-negative Erythrocytes
MM Zinga, A Ibrahim, F Mohring, S Chainarin, TK Jonsdottir, S Ngernna, ...
Blood Journal, blood. 2025029557, 2026
Genomic Insights into Chromosomal Colistin Resistance and Virulence–Resistance Convergence in MDR/XDR Klebsiella pneumoniae from Tertiary Hospitals in …
A Waheed, SA Khan, S Ahmad, JE Phelan, GF Rani, S Campino, TA Khan, ...
Pathogens 15 (2), 218, 2026
Menaquinone depletion resensitises bedaquiline-resistant tuberculosis
J Wetzel, J Dallow, E Davis, WH Pearson, S Daems, M Govaerts, ...
bioRxiv, 2026.02. 10.702511, 2026
Malaria-GENOMAP: a web-based tool for exploring genomic variation of malaria parasites
J Thorpe, N Billows, GC Ngwana-Joseph, A Ibrahim, D Nolder, ...
Bioinformatics 42 (2), btag016, 2026
Malaria-MOI: A flexible and scalable tool for predicting multiplicity of infection in malaria parasites
N Billows, J Phelan, J Thorpe, LN Vanheer, MKI Tan, S Campino, ...
Genome medicine, 2026
The microevolutionary trajectory of endemic multidrug-resistant tuberculosis strains in Portugal toward increased drug resistance levels and its clinical significance
P Gomes, P Paixão, F Maltez, L Brum, JE Phelan, S Campino, TG Clark, ...
Frontiers in Microbiology 16, 1716549, 2026
Whole Genome Sequencing of Drug-Resistant Vibrio cholerae Serotype Ogawa from an Outbreak in Khyber Pakhtunkhwa
A Ali, M Khan, TA Khan, S Ahmad, N Rahman, A Waheed, TG Clark
Pathogens 15 (1), 39, 2025
Highly conserved Plasmodium vivax genomes in Duffy-negative individuals from Sudan
RE Schroeder, S Ahmed, A Ford, M Elfaki, SO Hamad, TM Elfaki, ...
Scientific reports 15 (1), 44916, 2025
Enhancing whole genome DNA amplification of Plasmodium falciparum for advanced molecular surveillance in malaria control
MKI Tan, MCS de Jesus, JE Phelan, J Thorpe, D Ward, R Batra, A Patel, ...
Malaria journal 24 (1), 445, 2025
Novel zoonotic cases of Plasmodium simium from São Paulo with a reference genome of the Brazilian strain
E Manko, N Billows, M Higgins, D Ward, A Ibrahim, S Campino, ...
Scientific reports 15 (1), 43703, 2025
Comparative genomic insights into multidrug resistance in classical and hypervirulent K. pneumoniae clinical isolates
Azra, I Ullah, W Hinthong, JE Phelan, S Campino, IU Haq, ZU Din, ...
Scientific reports, 2025
Genome-wide analysis of genetic diversity in Anopheles darlingi from Rondônia State, Brazil
S Moss, H Acford-Palmer, AO Andrade, E Manko, J Phelan, M Higgins, ...
Communications biology, 2025
Whole-Genome Analysis of Drug Resistance and Transmission Patterns in Mycobacterium tuberculosis from Khyber Pakhtunkhwa, Pakistan
MF Khan, J Phelan, SN Khan, A Ali, FM Awan, A Obaid, D Ahmad, ...
TOAST: a novel tool for designing targeted gene amplicons and an optimised set of primers for high-throughput sequencing in tuberculosis genomic studies
L Wang, N Thawong, J Thorpe, M Higgins, MTK Ik, W Sawaengdee, ...
BMC genomics 26 (1), 1058, 2025
Dissemination of arr-2 and arr-3 is associated with class 1 integrons in Klebsiella pneumoniae clinical isolates from Portugal
R Elias, A Modesto, D Machado, B Pereira, J Phelan, J Melo-Cristino, ...
Medical Microbiology and Immunology 214 (1), 6, 2025
Genetic insights into antimicrobial resistance and virulence characteristics of Salmonella enterica isolated from Nile tilapia sourced from retail markets in Thailand
JO Odoi, S Anuntawirun, N Roongrojmongkhon, W Singchat, T Panthum, ...
BMC microbiology 25 (1), 777, 2025
Emergence of novel sublineages of Mycobacterium tuberculosis in Pakistan
MT Khan, C Zhu, AO Al Khatib, DS Alshaya, AA Al-Qahtani, I Ahmad, ...
International Journal of Medical Microbiology, 151684, 2025
Expanding Tuberculosis Drug Resistance Prediction beyond binary: Deep Learning for Minimum Inhibitory Concentration prediction
L Wang, S Campino, TG Clark, JE Phelan
The role of cytochrome bc1 inhibitors in future tuberculosis treatment regimens
C Aguilar-Pérez, AJ Lenaerts, C Villellas, J Guillemont, J Dallow, ...
Nature communications 16 (1), 9344, 2025
A multi-stage machine learning framework for stepwise prediction of tuberculosis treatment outcomes: Integrating gradient boosted decision trees and feature-level analysis for …
L Wang, S Campino, TG Clark, JE Phelan
The First Chromosome-Scale Genome Assembly for Dermacentor reticulatus: A Key Vector of Tick-Borne Pathogens of Public and Veterinary Health Importance in …
N Billows, ML White, J Thorpe, M Higgins, E Collins, MS de Jesus, ...
bioRxiv, 2025.10. 09.681344, 2025
Decoding Positive Selection in Mycobacterium tuberculosis with Phylogeny-Guided Graph Attention Models
L Wang, S Campino, TG Clark, JE Phelan
arXiv preprint arXiv:2510.08703, 2025
Genomic insights into persistent infections, reinfections, and subspecies diversity of Mycobacteroides abscessus: A whole-genome sequencing study of Thai and global isolates
K Trisakul, A Sirichoat, A Nithichanon, S Rotcheewaphan, J Phelan, ...
Infection, Genetics and Evolution, 105838, 2025
Ciprofloxacin resistance in Klebsiella pneumoniae: phenotype prediction from genotype and global distribution of resistance determinants
KK Tsang, I Amke, DM Aanensen, J Abdulahi, A Aiken, MA Bachman, ...
bioRxiv, 2025.09. 24.678318, 2025
Whole-Genome Sequencing Analysis of Drug-Resistant Salmonella Typhi in Children
M Riaz, S Ahmad, F Sattar, G Li, ZU Din, S Ahmad, Azra, A Waheed, ...
Pathogens 14 (10), 967, 2025
Genomic insights into pyrazinamide and fluoroquinolone resistance in multidrug-resistant tuberculosis in Khyber Pakhtunkhwa, Pakistan
ZU Din, F Ullah, AS Khan, S Ahmad, A Waheed, N Muhmmad, F Ali, ...
International Journal of Medical Microbiology, 151674, 2025
Emerging Rifampicin Resistance in M. tuberculosis: First Report on Characterization of a Novel rpoB (Ser431Phe) Mutation and Phylogenetic Lineages in Khyber Pakhtunkhwa, Pakistan
M Gul, S Ali, TA Khan, A Rehman, M Qasim, H Naveed, M Asiri, JE Phelan, ...
Whole-genome sequencing analysis of Burkholderia pseudomallei comparing drug-resistant and pan-susceptible isolates reveals novel biomarkers for drug resistance
Y Hinwan, N Nithimongkolchai, K Trisakul, B Kaewseekhao, ...
Infection, Genetics and Evolution 133, 105779, 2025
Global-scale population genetic analysis of Plasmodium falciparum identifies country-and region-specific patterns of malaria parasite adaptation
N Billows, JG Dombrowski, J Thorpe, L Vanheer, S Moss, J Gitaka, ...
Genomic decoding of drug-resistant tuberculosis transmission in Thailand over three decades
N Thawong, P Srilohasin, JE Phelan, W Phornsiricharoenphant, ...
Scientific reports 15 (1), 29617, 2025
Genome-wide analysis and longitudinal study of Klebsiella pneumoniae in Portugal: Tracing the evolution and spread of carbapenem resistance
R Elias, JE Phelan, L Lito, C Caneiras, C Marques, M Pinto, ...
International journal of antimicrobial agents, 107583, 2025
A timeline of reckoning: Tracking the historical rise of antimicrobial resistance across HIV, TB, and malaria
T Williamson, J Adderley, K Quinn, TG Clark, SR Lewin, C Doerig
Journal of global antimicrobial resistance, 2025
Genomic insights into Klebsiella pneumoniae: Virulence, resistance, and transmission in South and Southeast Asia
W Hinthong, J Phelan, A Hussain, R Mazumder, IU Haq, I Ullah, T Roberts, ...
International Journal of Medical Microbiology, 151666, 2025
Profiling insecticide resistance phenotypes and genotypes in Aedes aegypti populations across four regions in Puerto Rico
EL Collins, JM Quintana, R Morales, S Moss, H Acford-Palmer, M Higgins, ...
Scientific reports 15 (1), 26116, 2025
Complete and draft genome sequences of clinical Mycobacterium tuberculosis isolates from the Philippines
SM Rojas, MAA Tujan, AKC Valencia, JBG Capin, TJR Dizon, MCG Ama, ...
Microbiology resource announcements 14 (7), e00305-25, 2025
PPE50 variants as novel phylogeographic signatures of host-pathogen co-evolution in tuberculosis
C D’Souza, JE Phelan, PJ Gomez-Gonzalez, J Thorpe, TG Clark, ...
Communications biology 8 (1), 1024, 2025
Rapid detection of antibiotic resistance in Burkholderia pseudomallei using MALDI-TOF mass spectrometry
N Nithimongkolchai, Y Hinwan, K Trisakul, L Wonglakorn, ...
Scientific reports 15 (1), 21867, 2025
The ahpC c−54t compensatory mutation is not always a valid surrogate for isoniazid resistance in Mycobacterium tuberculosis
V Szél, JE Phelan, SB Georghiou, DL Dolinger, TG Clark, S Niemann, ...
Antimicrobial agents and chemotherapy 69 (6), e00265-25, 2025
Gametocyte production and transmission fitness of African and Asian Plasmodium falciparum isolates with differential susceptibility to artemisinins
NI Proellochs, C Andolina, J Ramjith, R Stoter, GJ van Gemert, ...
Antimicrobial agents and chemotherapy 69 (6), e01930-24, 2025
Genome wide population genetics and molecular surveillance of insecticide resistance in Anopheles stephensi mosquitoes from Awash Sebat Kilo in Ethiopia
H Acford-Palmer, FG Tadesse, E Manko, JE Phelan, M Higgins, ...
Scientific reports 15 (1), 16443, 2025
Genomic analysis of Mycobacterium tuberculosis in Thailand reveals circulating lineage diversity, transmission, and drug resistance mutations
N Thawong, P Srilohasin, JE Phelan, W Phornsiricharoenphant, ...
An open-access dashboard to interrogate the genetic diversity of Mycobacterium tuberculosis clinical isolates (vol 14, 24792, 2024)
J Phelan, K van den Heede, S Masyn, R Verbeeck, TG Clark, ...
SCIENTIFIC REPORTS 15 (1), 2025
Author Correction: An open-access dashboard to interrogate the genetic diversity of Mycobacterium tuberculosis clinical isolates
J Phelan, K Van den Heede, S Masyn, R Verbeeck, TG Clark, ...
Scientific Reports 15, 11565, 2025
Genome-wide analyses of Mycobacterium tuberculosis complex isolates reveal insights into circulating lineages and drug resistance mutations in The Gambia
L Tientcheu, F Faal, N Top, O Jobe, SM Colley, A Ayorinde, A Mendy, ...
Research Square, rs. 3. rs-5913893, 2025
A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission
B Sobkowiak, P Cudahy, MH Chitwood, TG Clark, C Colijn, L Grandjean, ...
Genome medicine 17 (1), 8, 2025
Antibiotic Susceptibility Patterns and Virulence Profiles of Classical and Hypervirulent Klebsiella pneumoniae Strains Isolated from Clinical Samples in Khyber …
Azra, TA Khan, I Ul Haq, W Hinthong, S Campino, A Gohar, N Khan, ...
Pathogens 14 (1), 79, 2025
A novel tool for designing targeted gene amplicons and an optimised set of primers for high-throughput sequencing in tuberculosis genomic studies
L Wang, N Thawong, J Thorpe, M Higgins, MT Kia Ik, W Sawaengdee, ...
bioRxiv, 2025.01. 13.632698, 2025
Serological insights from SARS-CoV-2 heterologous prime and boost responses in Thailand
D Ward, L Pattarapreeyakul, R Pitaksalee, N Thawong, W Sawaengdee, ...
Scientific reports 15 (1), 1519, 2025
Application of a targeted amplicon sequencing panel to screen for insecticide resistance mutations in Anopheles darlingi populations from Brazil
H Acford-Palmer, AO Andrade, JE Phelan, RA Santana, SCP Lopes, ...
Scientific reports 15 (1), 731, 2025
Long short-term memory-based deep learning model for the discovery of antimicrobial peptides targeting Mycobacterium tuberculosis
L Wang, S Campino, TG Clark, JE Phelan
Bioinformatics advances 5 (1), vbaf274, 2025
A novel protein subfamily of the Mycobacterium tuberculosis complex shows stable co-evolution with human populations
C D'Souza, J Phelan, PJ Gomez-Gonzalez, J Thorpe, TG Clark, ...
Springer Nature, 2025
Genomic analysis of global Plasmodium vivax populations reveals insights into the evolution of drug resistance
GC Ngwana-Joseph, JE Phelan, E Manko, JG Dombrowski, ...
Nature communications 15 (1), 10771, 2024
Genome sequencing of Plasmodium malariae identifies continental segregation and mutations associated with reduced pyrimethamine susceptibility
A Ibrahim, F Mohring, E Manko, DA van Schalkwyk, JE Phelan, D Nolder, ...
Nature communications 15 (1), 10779, 2024
TGV: suite of tools to visualize transmission graphs
JE Phelan, F Niazi, L Wang, GC Ngwana-Joseph, B Sobkowiak, T Cohen, ...
NAR genomics and bioinformatics 6 (4), lqae158, 2024
Longitudinal Immunological Analysis of Portuguese Healthcare Workers Across the COVID-19 Pandemic Reveals Differences in the Humoral Immune Response to Vaccines
L Vilela, A Silva, A Cruz, M Sousa, M Costa, F Fonseca, S Campino, ...
Vaccines 12 (12), 1358, 2024
Leveraging large-scale Mycobacterium tuberculosis whole genome sequence data to characterise drug-resistant mutations using machine learning and statistical …
SS Pruthi, N Billows, J Thorpe, S Campino, JE Phelan, F Mohareb, ...
Scientific reports 14 (1), 27091, 2024
Association of the humoral immune response with the inflammatory profile in Plasmodium vivax infections in pregnant women
RM Souza, MI Dos Santos, LC Gomes, BBP de Melo, EPM Separovic, ...
PLoS neglected tropical diseases 18 (11), e0012636, 2024
Insights into the use of cytochrome bc1 inhibitors for future therapeutic strategies for tuberculosis
CA Pérez, A Lenaerts, C Villellas, J Guillemont, J Dallow, H Painter, ...
An open-access dashboard to interrogate the genetic diversity of Mycobacterium tuberculosis clinical isolates
J Phelan, K Van den Heede, S Masyn, R Verbeeck, TG Clark, ...
Scientific reports 14 (1), 24792, 2024
Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae
KK Tsang, MMC Lam, RR Wick, KL Wyres, M Bachman, S Baker, K Barry, ...
Microbial genomics 10 (10), 001294, 2024
Phenotypic evidence of deltamethrin resistance and identification of selective sweeps in Anopheles mosquitoes on the Bijagós Archipelago, Guinea-Bissau
S Moss, RT Jones, E Pretorius, ET da Silva, M Higgins, M Kristan, ...
Scientific reports 14 (1), 22840, 2024
Whole genome sequence analysis of population structure and insecticide resistance markers in Anopheles melas from the Bijagós Archipelago, Guinea-Bissau
S Moss, E Pretorius, S Ceesay, ET da Silva, H Hutchins, MO Ndiath, ...
Parasites & vectors 17 (1), 396, 2024
Whole genome analysis of Plasmodium malariae identifies reduced susceptibility to pyrimethamine, validated using ortholog replacement in P. knowlesi
A Ibrahim, F Mohring, E Manko, D van Schalkwyk, J Phelan, D Nolder, ...
A Pan Plasmodium lateral flow recombinase polymerase amplification assay for monitoring malaria parasites in vectors and human populations
M Higgins, M Kristan, EL Collins, LA Messenger, JG Dombrowski, ...
Scientific reports 14 (1), 20165, 2024
Comparisons of genome assembly tools for characterization of Mycobacterium tuberculosis genomes using hybrid sequencing technologies
K Trisakul, Y Hinwan, J Eisiri, K Salao, A Chaiprasert, P Kamolwat, ...
PeerJ 12, e17964, 2024
Whole genome sequencing analysis of Mycobacterium tuberculosis reveals circulating strain types and drug-resistance mutations in the Philippines
L Wang, DR Lim, JE Phelan, LT Reyes, AG Palparan, MGC Sanchez, ...
Scientific reports 14 (1), 19602, 2024
Exploring the Antimicrobial Resistance Profile of Salmonella typhi and Its Clinical Burden
M Asghar, TA Khan, MN Séraphin, LF Schimke, O Cabral-Marques, ...
Antibiotics 13 (8), 765, 2024
Plasmodium falciparum population dynamics in East Africa and genomic surveillance along the Kenya-Uganda border
A Osborne, E Mańko, H Waweru, A Kaneko, K Kita, S Campino, J Gitaka, ...
Scientific Reports 14 (1), 18051, 2024
Uncovering the genetic diversity in Aedes aegypti insecticide resistance genes through global comparative genomics
A Spadar, E Collins, LA Messenger, TG Clark, S Campino
Scientific Reports 14 (1), 13447, 2024
Large-scale statistical analysis of Mycobacterium tuberculosis genome sequences identifies compensatory mutations associated with multi-drug resistance
N Billows, J Phelan, D Xia, Y Peng, TG Clark, YM Chang
Scientific reports 14 (1), 12312, 2024
Exploring optimal drug targets through subtractive proteomics analysis and pangenomic insights for tailored drug design in tuberculosis
MF Khan, A Ali, HM Rehman, S Noor Khan, HM Hammad, M Waseem, ...
Scientific Reports 14 (1), 10904, 2024
Genome-wide association study of global Plasmodium vivax populations provides insights into the evolution of drug resistance
G Ngwana-Joseph, J Phelan, E Manko, J Dombrowski, S dos Santos, ...
Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applications
J Thorpe, W Sawaengdee, D Ward, M Campos, N Wichukchinda, ...
Scientific Reports 14 (1), 5201, 2024
Newly identified Mycobacterium africanum lineage 10, central Africa
C Guyeux, G Senelle, A Le Meur, P Supply, C Gaudin, JE Phelan, ...
Emerging infectious diseases 30 (3), 560, 2024
New reference genomes to distinguish the sympatric malaria parasites, Plasmodium ovale curtisi and Plasmodium ovale wallikeri
M Higgins, E Manko, D Ward, JE Phelan, D Nolder, CJ Sutherland, ...
Scientific reports 14 (1), 3843, 2024
Genomic analysis of Salmonella enterica from Metropolitan Manila abattoirs and markets reveals insights into circulating virulence and antimicrobial resistance …
JFB Mora, VYB Meclat, AMB Calayag, S Campino, JCR Hafalla, ...
Frontiers in Microbiology 14, 1304283, 2024
Genomic surveillance of Anopheles mosquitoes on the Bijagós Archipelago using custom targeted amplicon sequencing identifies mutations associated with …
S Moss, E Pretorius, S Ceesay, H Hutchins, ET da Silva, MO Ndiath, ...
Parasites & Vectors 17 (1), 10, 2024
A computational method for predicting the most likely evolutionary trajectories in the stepwise accumulation of resistance mutations
RC Eccleston, E Manko, S Campino, TG Clark, N Furnham
Elife 12, e84756, 2023
Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control
JE Phelan, A Turkiewicz, E Manko, J Thorpe, LN Vanheer, ...
Genome medicine 15 (1), 96, 2023
Detection of insecticide resistance markers in Anopheles funestus from the Democratic Republic of the Congo using a targeted amplicon sequencing panel
H Acford-Palmer, M Campos, J Bandibabone, S N’Do, C Bantuzeko, ...
Scientific Reports 13 (1), 17363, 2023
Mixed infections in genotypic drug-resistant Mycobacterium tuberculosis
L Wang, S Campino, J Phelan, TG Clark
Scientific Reports 13 (1), 17100, 2023
Functional genetic variation in pe/ppe genes contributes to diversity in Mycobacterium tuberculosis lineages and potential interactions with the human host
PJ Gómez-González, AD Grabowska, LD Tientcheu, AG Tsolaki, ...
Frontiers in microbiology 14, 1244319, 2023
Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data
A Spadar, JE Phelan, TG Clark, S Campino
Parasites & vectors 16 (1), 265, 2023
Genomic and functional portrait of multidrug-resistant, hydrogen sulfide (H2S)-producing variants of Escherichia coli
R Mazumder, A Hussain, MM Rahman, JE Phelan, S Campino, ...
Frontiers in Microbiology 14, 1206757, 2023
High throughput human genotyping for variants associated with malarial disease outcomes using custom targeted amplicon sequencing
A Osborne, JE Phelan, LN Vanheer, A Manjurano, J Gitaka, CJ Drakeley, ...
Scientific Reports 13 (1), 12062, 2023
Drug resistance profiling of asymptomatic and low-density Plasmodium falciparum malaria infections on Ngodhe island, Kenya, using custom dual-indexing next …
A Osborne, JE Phelan, A Kaneko, W Kagaya, C Chan, M Ngara, ...
Scientific Reports 13 (1), 11416, 2023
Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data
G Napier, D Couvin, G Refrégier, C Guyeux, CJ Meehan, C Sola, ...
Scientific reports 13 (1), 11368, 2023
Feature weighted models to address lineage dependency in drug-resistance prediction from Mycobacterium tuberculosis genome sequences
N Billows, JE Phelan, D Xia, Y Peng, TG Clark, YM Chang
Bioinformatics 39 (7), btad428, 2023
Case report: A successfully treated case of community-acquired urinary tract infection due to Klebsiella aerogenes in Bangladesh
R Mazumder, A Hussain, B Bhadra, J Phelan, S Campino, TG Clark, ...
Frontiers in medicine 10, 1206756, 2023
Genome-wide genetic variation and molecular surveillance of drug resistance in Plasmodium falciparum isolates from asymptomatic individuals in …
LN Vanheer, A Mahamar, E Manko, SM Niambele, K Sanogo, A Youssouf, ...
Scientific Reports 13 (1), 9522, 2023
Genome dynamics of high-risk resistant and hypervirulent Klebsiella pneumoniae clones in Dhaka, Bangladesh
A Hussain, R Mazumder, A Ahmed, U Saima, JE Phelan, S Campino, ...
Frontiers in microbiology 14, 1184196, 2023
Bayesian compositional regression with microbiome features via variational inference
DAV Scott, E Benavente, J Libiseller-Egger, D Fedorov, J Phelan, E Ilina, ...
BMC bioinformatics 24 (1), 210, 2023
Emergence of KPC-3- and OXA-181-producing ST13 and ST17 Klebsiella pneumoniae in Portugal: genomic insights on national and international dissemination
R Elias, A Spadar, APA Hendrickx, RA Bonnin, L Dortet, M Pinto, ...
Journal of Antimicrobial Chemotherapy 78 (5), 1300-1308, 2023
Population dynamics and drug resistance mutations in Plasmodium falciparum on the Bijagós Archipelago, Guinea-Bissau
S Moss, E Mańko, H Vasileva, ET Da Silva, A Goncalves, A Osborne, ...
Scientific reports 13 (1), 6311, 2023
The evolution and transmission dynamics of multidrug-resistant tuberculosis in an isolated high-plateau population of Tibet, China
Q Jiang, HC Liu, QY Liu, JE Phelan, FX Tao, XQ Zhao, J Wang, JR Glynn, ...
Microbiology spectrum 11 (2), e03991-22, 2023